Comparative sequence analysis of Solanum and Arabidopsis in a hot spot for pathogen resistance on potato chromosome V reveals a patchwork of conserved and rapidly evolving genome segments.
Identifieur interne : 001E99 ( Main/Exploration ); précédent : 001E98; suivant : 001F00Comparative sequence analysis of Solanum and Arabidopsis in a hot spot for pathogen resistance on potato chromosome V reveals a patchwork of conserved and rapidly evolving genome segments.
Auteurs : Agim Ballvora [Allemagne] ; Anika Jöcker ; Prisca Viehöver ; Hirofumi Ishihara ; Jürgen Paal ; Khalid Meksem ; Rémy Bruggmann ; Heiko Schoof ; Bernd Weisshaar ; Christiane GebhardtSource :
- BMC genomics [ 1471-2164 ] ; 2007.
Descripteurs français
- KwdFr :
- Analyse de séquence d'ADN (MeSH), Arabidopsis (génétique), Arabidopsis (microbiologie), Banque de gènes (MeSH), Cartographie chromosomique (MeSH), Chromosomes artificiels de bactérie (MeSH), Chromosomes de plante (génétique), Données de séquences moléculaires (MeSH), Immunité innée (génétique), Locus de caractère quantitatif (MeSH), Maladies des plantes (génétique), Maladies des plantes (microbiologie), Ordre des gènes (MeSH), Phytophthora (MeSH), Solanum (génétique), Solanum (microbiologie), Spécificité d'espèce (MeSH), Synténie (génétique), Séquence nucléotidique (MeSH).
- MESH :
- génétique : Arabidopsis, Chromosomes de plante, Immunité innée, Maladies des plantes, Solanum, Synténie.
- microbiologie : Arabidopsis, Maladies des plantes, Solanum.
- Analyse de séquence d'ADN, Banque de gènes, Cartographie chromosomique, Chromosomes artificiels de bactérie, Données de séquences moléculaires, Locus de caractère quantitatif, Ordre des gènes, Phytophthora, Spécificité d'espèce, Séquence nucléotidique.
English descriptors
- KwdEn :
- Arabidopsis (genetics), Arabidopsis (microbiology), Base Sequence (MeSH), Chromosome Mapping (MeSH), Chromosomes, Artificial, Bacterial (MeSH), Chromosomes, Plant (genetics), Gene Library (MeSH), Gene Order (MeSH), Immunity, Innate (genetics), Molecular Sequence Data (MeSH), Phytophthora (MeSH), Plant Diseases (genetics), Plant Diseases (microbiology), Quantitative Trait Loci (MeSH), Sequence Analysis, DNA (MeSH), Solanum (genetics), Solanum (microbiology), Species Specificity (MeSH), Synteny (genetics).
- MESH :
- genetics : Arabidopsis, Chromosomes, Plant, Immunity, Innate, Plant Diseases, Solanum, Synteny.
- microbiology : Arabidopsis, Plant Diseases, Solanum.
- Base Sequence, Chromosome Mapping, Chromosomes, Artificial, Bacterial, Gene Library, Gene Order, Molecular Sequence Data, Phytophthora, Quantitative Trait Loci, Sequence Analysis, DNA, Species Specificity.
Abstract
BACKGROUND
Quantitative phenotypic variation of agronomic characters in crop plants is controlled by environmental and genetic factors (quantitative trait loci = QTL). To understand the molecular basis of such QTL, the identification of the underlying genes is of primary interest and DNA sequence analysis of the genomic regions harboring QTL is a prerequisite for that. QTL mapping in potato (Solanum tuberosum) has identified a region on chromosome V tagged by DNA markers GP21 and GP179, which contains a number of important QTL, among others QTL for resistance to late blight caused by the oomycete Phytophthora infestans and to root cyst nematodes.
RESULTS
To obtain genomic sequence for the targeted region on chromosome V, two local BAC (bacterial artificial chromosome) contigs were constructed and sequenced, which corresponded to parts of the homologous chromosomes of the diploid, heterozygous genotype P6/210. Two contiguous sequences of 417,445 and 202,781 base pairs were assembled and annotated. Gene-by-gene co-linearity was disrupted by non-allelic insertions of retrotransposon elements, stretches of diverged intergenic sequences, differences in gene content and gene order. The latter was caused by inversion of a 70 kbp genomic fragment. These features were also found in comparison to orthologous sequence contigs from three homeologous chromosomes of Solanum demissum, a wild tuber bearing species. Functional annotation of the sequence identified 48 putative open reading frames (ORF) in one contig and 22 in the other, with an average of one ORF every 9 kbp. Ten ORFs were classified as resistance-gene-like, 11 as F-box-containing genes, 13 as transposable elements and three as transcription factors. Comparing potato to Arabidopsis thaliana annotated proteins revealed five micro-syntenic blocks of three to seven ORFs with A. thaliana chromosomes 1, 3 and 5.
CONCLUSION
Comparative sequence analysis revealed highly conserved collinear regions that flank regions showing high variability and tandem duplicated genes. Sequence annotation revealed that the majority of the ORFs were members of multiple gene families. Comparing potato to Arabidopsis thaliana annotated proteins suggested fragmented structural conservation between these distantly related plant species.
DOI: 10.1186/1471-2164-8-112
PubMed: 17474978
PubMed Central: PMC3225836
Affiliations:
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resistance on potato chromosome V reveals a patchwork of conserved and rapidly evolving genome segments.</title><author><name sortKey="Ballvora, Agim" sort="Ballvora, Agim" uniqKey="Ballvora A" first="Agim" last="Ballvora">Agim Ballvora</name><affiliation wicri:level="3"><nlm:affiliation>Max-Planck Institut für Züchtungsforschung, Carl von Linné Weg 10, 50829 Köln, Germany. ballvora@mpiz-koeln.mpg.de</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Max-Planck Institut für Züchtungsforschung, Carl von Linné Weg 10, 50829 Köln</wicri:regionArea><placeName><region type="land" nuts="1">Rhénanie-du-Nord-Westphalie</region><region type="district" nuts="2">District de Cologne</region><settlement type="city">Cologne</settlement></placeName></affiliation></author><author><name sortKey="Jocker, Anika" sort="Jocker, Anika" uniqKey="Jocker A" first="Anika" last="Jöcker">Anika Jöcker</name></author><author><name sortKey="Viehover, Prisca" sort="Viehover, Prisca" 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(microbiology)</term><term>Species Specificity (MeSH)</term><term>Synteny (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Analyse de séquence d'ADN (MeSH)</term><term>Arabidopsis (génétique)</term><term>Arabidopsis (microbiologie)</term><term>Banque de gènes (MeSH)</term><term>Cartographie chromosomique (MeSH)</term><term>Chromosomes artificiels de bactérie (MeSH)</term><term>Chromosomes de plante (génétique)</term><term>Données de séquences moléculaires (MeSH)</term><term>Immunité innée (génétique)</term><term>Locus de caractère quantitatif (MeSH)</term><term>Maladies des plantes (génétique)</term><term>Maladies des plantes (microbiologie)</term><term>Ordre des gènes (MeSH)</term><term>Phytophthora (MeSH)</term><term>Solanum (génétique)</term><term>Solanum (microbiologie)</term><term>Spécificité d'espèce (MeSH)</term><term>Synténie (génétique)</term><term>Séquence nucléotidique (MeSH)</term></keywords><keywords scheme="MESH" qualifier="genetics" 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Loci</term><term>Sequence Analysis, DNA</term><term>Species Specificity</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence d'ADN</term><term>Banque de gènes</term><term>Cartographie chromosomique</term><term>Chromosomes artificiels de bactérie</term><term>Données de séquences moléculaires</term><term>Locus de caractère quantitatif</term><term>Ordre des gènes</term><term>Phytophthora</term><term>Spécificité d'espèce</term><term>Séquence nucléotidique</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><b>BACKGROUND</b></p><p>Quantitative phenotypic variation of agronomic characters in crop plants is controlled by environmental and genetic factors (quantitative trait loci = QTL). To understand the molecular basis of such QTL, the identification of the underlying genes is of primary interest and DNA sequence analysis of the genomic regions harboring QTL is a prerequisite for that. QTL mapping in potato (Solanum tuberosum) has identified a region on chromosome V tagged by DNA markers GP21 and GP179, which contains a number of important QTL, among others QTL for resistance to late blight caused by the oomycete Phytophthora infestans and to root cyst nematodes.</p></div><div type="abstract" xml:lang="en"><p><b>RESULTS</b></p><p>To obtain genomic sequence for the targeted region on chromosome V, two local BAC (bacterial artificial chromosome) contigs were constructed and sequenced, which corresponded to parts of the homologous chromosomes of the diploid, heterozygous genotype P6/210. Two contiguous sequences of 417,445 and 202,781 base pairs were assembled and annotated. Gene-by-gene co-linearity was disrupted by non-allelic insertions of retrotransposon elements, stretches of diverged intergenic sequences, differences in gene content and gene order. The latter was caused by inversion of a 70 kbp genomic fragment. These features were also found in comparison to orthologous sequence contigs from three homeologous chromosomes of Solanum demissum, a wild tuber bearing species. Functional annotation of the sequence identified 48 putative open reading frames (ORF) in one contig and 22 in the other, with an average of one ORF every 9 kbp. Ten ORFs were classified as resistance-gene-like, 11 as F-box-containing genes, 13 as transposable elements and three as transcription factors. Comparing potato to Arabidopsis thaliana annotated proteins revealed five micro-syntenic blocks of three to seven ORFs with A. thaliana chromosomes 1, 3 and 5.</p></div><div type="abstract" xml:lang="en"><p><b>CONCLUSION</b></p><p>Comparative sequence analysis revealed highly conserved collinear regions that flank regions showing high variability and tandem duplicated genes. Sequence annotation revealed that the majority of the ORFs were members of multiple gene families. Comparing potato to Arabidopsis thaliana annotated proteins suggested fragmented structural conservation between these distantly related plant species.</p></div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">17474978</PMID><DateCompleted><Year>2008</Year><Month>01</Month><Day>02</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1471-2164</ISSN><JournalIssue CitedMedium="Internet"><Volume>8</Volume><PubDate><Year>2007</Year><Month>May</Month><Day>02</Day></PubDate></JournalIssue><Title>BMC genomics</Title><ISOAbbreviation>BMC Genomics</ISOAbbreviation></Journal><ArticleTitle>Comparative sequence analysis of Solanum and Arabidopsis in a hot spot for pathogen resistance on potato chromosome V reveals a patchwork of conserved and rapidly evolving genome segments.</ArticleTitle><Pagination><MedlinePgn>112</MedlinePgn></Pagination><Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">Quantitative phenotypic variation of agronomic characters in crop plants is controlled by environmental and genetic factors (quantitative trait loci = QTL). To understand the molecular basis of such QTL, the identification of the underlying genes is of primary interest and DNA sequence analysis of the genomic regions harboring QTL is a prerequisite for that. QTL mapping in potato (Solanum tuberosum) has identified a region on chromosome V tagged by DNA markers GP21 and GP179, which contains a number of important QTL, among others QTL for resistance to late blight caused by the oomycete Phytophthora infestans and to root cyst nematodes.</AbstractText><AbstractText Label="RESULTS" NlmCategory="RESULTS">To obtain genomic sequence for the targeted region on chromosome V, two local BAC (bacterial artificial chromosome) contigs were constructed and sequenced, which corresponded to parts of the homologous chromosomes of the diploid, heterozygous genotype P6/210. Two contiguous sequences of 417,445 and 202,781 base pairs were assembled and annotated. Gene-by-gene co-linearity was disrupted by non-allelic insertions of retrotransposon elements, stretches of diverged intergenic sequences, differences in gene content and gene order. The latter was caused by inversion of a 70 kbp genomic fragment. These features were also found in comparison to orthologous sequence contigs from three homeologous chromosomes of Solanum demissum, a wild tuber bearing species. Functional annotation of the sequence identified 48 putative open reading frames (ORF) in one contig and 22 in the other, with an average of one ORF every 9 kbp. Ten ORFs were classified as resistance-gene-like, 11 as F-box-containing genes, 13 as transposable elements and three as transcription factors. Comparing potato to Arabidopsis thaliana annotated proteins revealed five micro-syntenic blocks of three to seven ORFs with A. thaliana chromosomes 1, 3 and 5.</AbstractText><AbstractText Label="CONCLUSION" NlmCategory="CONCLUSIONS">Comparative sequence analysis revealed highly conserved collinear regions that flank regions showing high variability and tandem duplicated genes. Sequence annotation revealed that the majority of the ORFs were members of multiple gene families. Comparing potato to Arabidopsis thaliana annotated proteins suggested fragmented structural conservation between these distantly related plant species.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Ballvora</LastName><ForeName>Agim</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Max-Planck Institut für Züchtungsforschung, Carl von Linné Weg 10, 50829 Köln, Germany. ballvora@mpiz-koeln.mpg.de</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jöcker</LastName><ForeName>Anika</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Viehöver</LastName><ForeName>Prisca</ForeName><Initials>P</Initials></Author><Author ValidYN="Y"><LastName>Ishihara</LastName><ForeName>Hirofumi</ForeName><Initials>H</Initials></Author><Author ValidYN="Y"><LastName>Paal</LastName><ForeName>Jürgen</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Meksem</LastName><ForeName>Khalid</ForeName><Initials>K</Initials></Author><Author ValidYN="Y"><LastName>Bruggmann</LastName><ForeName>Rémy</ForeName><Initials>R</Initials></Author><Author ValidYN="Y"><LastName>Schoof</LastName><ForeName>Heiko</ForeName><Initials>H</Initials></Author><Author ValidYN="Y"><LastName>Weisshaar</LastName><ForeName>Bernd</ForeName><Initials>B</Initials></Author><Author ValidYN="Y"><LastName>Gebhardt</LastName><ForeName>Christiane</ForeName><Initials>C</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D003160">Comparative Study</PublicationType><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2007</Year><Month>05</Month><Day>02</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>BMC Genomics</MedlineTA><NlmUniqueID>100965258</NlmUniqueID><ISSNLinking>1471-2164</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D017360" MajorTopicYN="N">Arabidopsis</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D001483" MajorTopicYN="N">Base Sequence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D002874" MajorTopicYN="N">Chromosome Mapping</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D022202" MajorTopicYN="N">Chromosomes, Artificial, Bacterial</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D032461" MajorTopicYN="N">Chromosomes, Plant</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D015723" MajorTopicYN="N">Gene Library</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D023061" MajorTopicYN="N">Gene Order</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D007113" MajorTopicYN="N">Immunity, Innate</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010838" MajorTopicYN="N">Phytophthora</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D040641" MajorTopicYN="Y">Quantitative Trait Loci</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D032322" MajorTopicYN="N">Solanum</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D013045" MajorTopicYN="N">Species Specificity</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D026801" MajorTopicYN="N">Synteny</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2006</Year><Month>11</Month><Day>16</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2007</Year><Month>05</Month><Day>02</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2007</Year><Month>5</Month><Day>4</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate 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IdType="pubmed">9847076</ArticleId></ArticleIdList></Reference><Reference><Citation>Genetics. 1992 Dec;132(4):1141-60</Citation><ArticleIdList><ArticleId IdType="pubmed">1360934</ArticleId></ArticleIdList></Reference><Reference><Citation>Genomics. 1996 Jun 1;34(2):213-8</Citation><ArticleIdList><ArticleId IdType="pubmed">8661051</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Gen Genet. 1992 May;233(1-2):278-83</Citation><ArticleIdList><ArticleId IdType="pubmed">1351246</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Gen Genet. 1995 Nov 1;249(1):74-81</Citation><ArticleIdList><ArticleId IdType="pubmed">8552036</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Physiol. 2001 Jul;126(3):1331-40</Citation><ArticleIdList><ArticleId IdType="pubmed">11457984</ArticleId></ArticleIdList></Reference><Reference><Citation>Genetics. 1994 May;137(1):67-77</Citation><ArticleIdList><ArticleId IdType="pubmed">7914505</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 1998 Feb 15;26(4):1056-62</Citation><ArticleIdList><ArticleId IdType="pubmed">9461468</ArticleId></ArticleIdList></Reference><Reference><Citation>Curr Opin Plant Biol. 2003 Apr;6(2):128-33</Citation><ArticleIdList><ArticleId IdType="pubmed">12667868</ArticleId></ArticleIdList></Reference><Reference><Citation>Theor Appl Genet. 1994 Aug;88(6-7):764-9</Citation><ArticleIdList><ArticleId IdType="pubmed">24186175</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Mol Biol. 2000 Oct;44(3):371-85</Citation><ArticleIdList><ArticleId IdType="pubmed">11199395</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant J. 2003 May;34(4):529-41</Citation><ArticleIdList><ArticleId IdType="pubmed">12753591</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2002 Jul 9;99(14):9573-8</Citation><ArticleIdList><ArticleId IdType="pubmed">12060715</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant J. 2002 May;30(3):361-71</Citation><ArticleIdList><ArticleId IdType="pubmed">12000683</ArticleId></ArticleIdList></Reference><Reference><Citation>Nature. 2005 May 26;435(7041):446-51</Citation><ArticleIdList><ArticleId IdType="pubmed">15917798</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Biotechnol J. 2003 Mar;1(2):91-9</Citation><ArticleIdList><ArticleId IdType="pubmed">17147746</ArticleId></ArticleIdList></Reference><Reference><Citation>Trends Plant Sci. 2005 Jun;10(6):297-304</Citation><ArticleIdList><ArticleId IdType="pubmed">15949764</ArticleId></ArticleIdList></Reference><Reference><Citation>Curr Biol. 2004 Jan 6;14(1):R22-4</Citation><ArticleIdList><ArticleId IdType="pubmed">14711430</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant J. 2000 Jan;21(1):73-81</Citation><ArticleIdList><ArticleId IdType="pubmed">10652152</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Gen Genet. 1990 Nov;224(2):177-82</Citation><ArticleIdList><ArticleId IdType="pubmed">1980523</ArticleId></ArticleIdList></Reference><Reference><Citation>Theor Appl Genet. 1996 Jan;92(1):101-8</Citation><ArticleIdList><ArticleId IdType="pubmed">24166123</ArticleId></ArticleIdList></Reference><Reference><Citation>Genetics. 2002 Nov;162(3):1423-34</Citation><ArticleIdList><ArticleId IdType="pubmed">12454085</ArticleId></ArticleIdList></Reference><Reference><Citation>Theor Appl Genet. 1989 Jul;78(1):65-75</Citation><ArticleIdList><ArticleId IdType="pubmed">24227032</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2000 Jan 1;28(1):45-8</Citation><ArticleIdList><ArticleId IdType="pubmed">10592178</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2000 Dec;16(12):1145-50</Citation><ArticleIdList><ArticleId IdType="pubmed">11159333</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2001 Sep;17(9):847-8</Citation><ArticleIdList><ArticleId IdType="pubmed">11590104</ArticleId></ArticleIdList></Reference><Reference><Citation>Trends Genet. 2000 Jun;16(6):276-7</Citation><ArticleIdList><ArticleId IdType="pubmed">10827456</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Res. 2005 Sep;15(9):1284-91</Citation><ArticleIdList><ArticleId IdType="pubmed">16109971</ArticleId></ArticleIdList></Reference><Reference><Citation>Gene. 1995 Dec 29;167(1-2):GC1-10</Citation><ArticleIdList><ArticleId IdType="pubmed">8566757</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant J. 2005 Oct;44(1):37-51</Citation><ArticleIdList><ArticleId IdType="pubmed">16167894</ArticleId></ArticleIdList></Reference><Reference><Citation>Cell. 2006 Feb 24;124(4):803-14</Citation><ArticleIdList><ArticleId IdType="pubmed">16497589</ArticleId></ArticleIdList></Reference><Reference><Citation>Annu Rev Phytopathol. 2001;39:285-312</Citation><ArticleIdList><ArticleId IdType="pubmed">11701867</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 1998 Feb 15;26(4):1107-15</Citation><ArticleIdList><ArticleId IdType="pubmed">9461475</ArticleId></ArticleIdList></Reference><Reference><Citation>Genetics. 1988 Dec;120(4):1095-103</Citation><ArticleIdList><ArticleId IdType="pubmed">17246486</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Biol. 2002;3(12):RESEARCH0082</Citation><ArticleIdList><ArticleId IdType="pubmed">12537571</ArticleId></ArticleIdList></Reference><Reference><Citation>Theor Appl Genet. 2003 Jan;106(2):317-25</Citation><ArticleIdList><ArticleId IdType="pubmed">12582858</ArticleId></ArticleIdList></Reference><Reference><Citation>J Mol Biol. 2001 Dec 14;314(5):1041-52</Citation><ArticleIdList><ArticleId IdType="pubmed">11743721</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Gen Genet. 1991 May;227(1):81-5</Citation><ArticleIdList><ArticleId IdType="pubmed">1675423</ArticleId></ArticleIdList></Reference><Reference><Citation>Nature. 2000 Dec 14;408(6814):796-815</Citation><ArticleIdList><ArticleId IdType="pubmed">11130711</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Res. 2000 Apr;10(4):516-22</Citation><ArticleIdList><ArticleId IdType="pubmed">10779491</ArticleId></ArticleIdList></Reference><Reference><Citation>Curr Opin Plant Biol. 2003 Apr;6(2):121-7</Citation><ArticleIdList><ArticleId IdType="pubmed">12667867</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2000 Aug 1;97(16):9121-6</Citation><ArticleIdList><ArticleId IdType="pubmed">10908680</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Rev Genet. 2001 Jul;2(7):493-503</Citation><ArticleIdList><ArticleId IdType="pubmed">11433356</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell. 2005 Feb;17(2):343-60</Citation><ArticleIdList><ArticleId IdType="pubmed">15659640</ArticleId></ArticleIdList></Reference><Reference><Citation>Annu Rev Phytopathol. 2001;39:79-102</Citation><ArticleIdList><ArticleId IdType="pubmed">11701860</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell. 2001 Apr;13(4):979-88</Citation><ArticleIdList><ArticleId IdType="pubmed">11283350</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 1997 Sep 1;25(17):3389-402</Citation><ArticleIdList><ArticleId IdType="pubmed">9254694</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>Allemagne</li></country><region><li>District de Cologne</li><li>Rhénanie-du-Nord-Westphalie</li></region><settlement><li>Cologne</li></settlement></list><tree><noCountry><name sortKey="Bruggmann, Remy" sort="Bruggmann, Remy" uniqKey="Bruggmann R" first="Rémy" last="Bruggmann">Rémy Bruggmann</name><name sortKey="Gebhardt, Christiane" sort="Gebhardt, Christiane" uniqKey="Gebhardt C" first="Christiane" last="Gebhardt">Christiane Gebhardt</name><name sortKey="Ishihara, Hirofumi" sort="Ishihara, Hirofumi" uniqKey="Ishihara H" first="Hirofumi" last="Ishihara">Hirofumi Ishihara</name><name sortKey="Jocker, Anika" sort="Jocker, Anika" uniqKey="Jocker A" first="Anika" last="Jöcker">Anika Jöcker</name><name sortKey="Meksem, Khalid" sort="Meksem, Khalid" uniqKey="Meksem K" first="Khalid" last="Meksem">Khalid Meksem</name><name sortKey="Paal, Jurgen" sort="Paal, Jurgen" uniqKey="Paal J" first="Jürgen" last="Paal">Jürgen Paal</name><name sortKey="Schoof, Heiko" sort="Schoof, Heiko" uniqKey="Schoof H" first="Heiko" last="Schoof">Heiko Schoof</name><name sortKey="Viehover, Prisca" sort="Viehover, Prisca" uniqKey="Viehover P" first="Prisca" last="Viehöver">Prisca Viehöver</name><name sortKey="Weisshaar, Bernd" sort="Weisshaar, Bernd" uniqKey="Weisshaar B" first="Bernd" last="Weisshaar">Bernd Weisshaar</name></noCountry><country name="Allemagne"><region name="Rhénanie-du-Nord-Westphalie"><name sortKey="Ballvora, Agim" sort="Ballvora, Agim" uniqKey="Ballvora A" first="Agim" last="Ballvora">Agim Ballvora</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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